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Windows 365 streams a full, personalized Windows desktop (a "Cloud PC") from the Microsoft cloud to any device. For enterprises, "management" is the entire ecosystem of tools and processes required to deploy, secure, and optimize thousands of these Cloud PCs. It’s how you ensure the service is both a productive tool for employees and a secure, cost-effective asset for the business.
Moving to Cloud PCs is a strategic step, but its true value is unlocked by effective management. This isn't just an IT task; it’s a core business function. When done right, it enforces a zero-trust security posture, ensures employees are productive with the right apps from day one, and provides a level of cost control and operational efficiency that is impossible to achieve with traditional physical PCs.
To build a successful management strategy, you first need to understand the foundational tools provided by Microsoft. The two services below work together as the control plane for your entire Windows 365 environment.
Microsoft Intune is the central, cloud-native solution for modern endpoint management. When a Windows 365 Cloud PC is created, it is automatically enrolled in Intune, making Intune the primary tool for day-to-day device administration.
Your IT team uses the Microsoft Intune admin center as the single portal to configure policies, manage apps, and review device compliance for your entire fleet of Cloud PCs:
Microsoft Entra ID (formerly Azure AD) is the identity and access management backbone for your entire Microsoft ecosystem, including Windows 365. It's the "gatekeeper" that controls who can access what.
Its core functions for Windows 365 include:
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While Intune and Entra ID are powerful and essential, relying only on the native interfaces to manage thousands of users creates significant operational challenges. As organizations scale, IT teams often find themselves hitting a ceiling of complexity, cost, and manual effort.
At an enterprise scale, three high-level challenges quickly emerge:
Beyond the high-level issues, IT administrators run into specific, daily operational hurdles inside the Intune console. These gaps can impact everything from security to help desk efficiency.
To solve these challenges, enterprises adopt a unified management platform that sits on top of the native Microsoft tools. These platforms act as an automation and optimization layer, centralizing control and filling the operational gaps left by the native tools. Nerdio Manager for Enterprise is a prominent example of a platform built specifically for this purpose.

A unified platform directly addresses the high-level scaling issues:
The primary value of a management layer is solving the granular, daily frustrations of IT teams:
| Native Tool Challenge | The Unified Platform Solution (Nerdio) |
|---|---|
| Compliance Blind Spots (Can’t see 3rd-party patch status) |
True Compliance Reporting (Integrates 3rd-party patch data with Intune reports for a single, accurate view.) |
| Misconfiguration Risk (No policy "undo" button) |
Policy Version Control & Rollback (Provides a one-click restore for Intune policies to instantly reverse bad changes.) |
| Remote Support Bottlenecks (Requires high-level admin rights) |
Granular, Role-Based Remote Access (Gives L1 help desks secure access to solve issues without making them global admins.) |
| Audit & Data Retention (Limited to 30-day data) |
Long-Term Audit-Ready Reporting (Offers 180+ day data retention, with reports ready for auditors in minutes.) |
| License Waste (No tracking for 3rd-party software) |
Software Metering & License Reclamation (Tracks real-world usage of expensive software so you can reclaim and reallocate unused licenses.) |
| Policy Conflicts (GPO vs. Intune clashes cause downtime) |
Proactive Conflict Detection (Provides analytics to identify and resolve policy conflicts before they impact users.) |
| Tool Sprawl (Need multiple tools for patching, support) |
Tool Consolidation (Integrates these functions into one interface, reducing cost and complexity.) |
| Legacy Tool Dependence (Intune doesn’t manage servers) |
Hybrid Management (Extends modern management to servers, reducing the need for legacy tools like SCCM.) |
This is the most critical point: a platform like Nerdio Manager for Enterprise is not a replacement for Microsoft's tools. It is an automation and management layer that sits on top of them, deployed securely in your own Azure subscription.
It leverages and extends the power of Intune, Microsoft Entra ID, and Azure. It makes the native tools easier to use and more powerful by automating their complex functions and providing a single, unified interface for all your endpoint management tasks, from Cloud PCs to physical devices and servers.
See how you can optimize processes, improve security, increase reliability, and save up to 70% on Microsoft Azure costs.
Successfully managing Windows 365 at an enterprise scale requires a modern, two-layer approach. You need both the foundational security and the operational agility to deliver a secure, reliable, and cost-effective experience to all your users.
This strategy relies on:
The best approach is one that empowers your IT team to be a business enabler, not a bottleneck. By addressing the operational gaps in the native toolset, you can fully unlock the promise of Windows 365, automating complex tasks and optimizing resource spend while ensuring your environment is secure and compliant.
Microsoft 365 apps for enterprise are the suite of productivity applications, such as Word, Excel, PowerPoint, SharePoint, OneDrive, and Microsoft Teams, licensed for large organizations. In the context of Windows 365, these are the core applications that employees use on their Cloud PCs to perform their daily work, and they are managed and secured as part of the overall endpoint strategy.
The primary, cloud-native tool used for device management in Microsoft 365 is Microsoft Intune. It is the central console for managing and securing all endpoints, including Windows 365 Cloud PCs, by applying policies, deploying applications, and enforcing security compliance.
Enterprise environments use a two-layer approach: the foundational Microsoft tools, primarily Microsoft Intune for policy and Microsoft Entra ID for identity, are essential. To manage at scale, enterprises add a unified management platform, such as Nerdio Manager for Enterprise, which sits on top of the native tools to provide advanced automation, cost optimization, and simplified operations.
Yes, but this capability is now part of the broader Microsoft 365 suite and is provided by Microsoft Intune. Intune is the Mobile Device Management (MDM) and Mobile Application Management (MAM) solution that allows IT teams to secure and manage all organization-owned and personal devices, including phones, tablets, and Cloud PCs, that access company data.
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Carisa Stinger
Head of Product Marketing
Carisa Stringer is the Head of Product Marketing at Nerdio, where she leads the strategy and execution of go-to-market plans for the company’s enterprise and managed service provider solutions. She joined Nerdio in 2025, bringing 20+ years of experience in end user computing, desktops-as-a-service, and Microsoft technologies. Prior to her current role, Carisa held key product marketing positions at Citrix and Anthology, where she contributed to innovative go-to-market initiatives. Her career reflects a strong track record in driving growth and adoption in the enterprise technology sector. Carisa holds a Bachelor of Science in Industrial Engineering from the Georgia Institute of Technology.